Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4025

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4024: 12392 - HMMPfam-Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)-PF10453,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1183513 to 1185147 12392 mRNA_4025: 12393 - K15634 gpmB probable phosphoglycerate mutase, at 1185909 to 1186748 12393 mRNA_4026: 12394 - HMMPfam-Cyclin-PF08613, at 1186887 to 1188212 12394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,185,513 - -0.0
1,185,542 - -0.7
1,185,544 + -1.5
1,185,545 + -1.4
1,185,551 + -3.5
1,185,839 + -2.3
1,186,091 - 12393 mRNA_4025 0.22 -1.6
1,186,364 - 12393 mRNA_4025 0.54 -1.5
1,186,385 + 12393 mRNA_4025 0.57 -2.1
1,186,644 - 12393 mRNA_4025 0.88 0.0
1,186,649 + 12393 mRNA_4025 0.88 -2.0
1,186,654 + 12393 mRNA_4025 0.89 -0.9
1,186,793 + -1.3
1,186,798 + -1.4