Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4021

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4020: 12388 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1175371 to 1177863 12388 mRNA_4021: 12389 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1178215 to 1180562 12389 mRNA_4022: 12390 - KOG2661 Peptidase family M48, at 1180594 to 1181890 12390

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,177,672 - -3.4
1,177,680 + -0.7
1,177,835 - 0.1
1,177,951 + -2.5
1,178,042 + 1.0
1,178,083 + -1.3
1,178,110 + -0.3
1,178,112 + -1.8
1,178,115 - -1.9
1,178,119 - -0.3
1,178,126 + -1.3
1,178,138 + -2.8
1,178,260 - -1.4
1,178,291 + -2.0
1,178,441 + -2.8
1,178,454 + 12389 mRNA_4021 0.10 -0.1
1,178,462 - 12389 mRNA_4021 0.11 0.6
1,179,182 - 12389 mRNA_4021 0.41 -0.5
1,179,182 - 12389 mRNA_4021 0.41 -1.7
1,179,327 - 12389 mRNA_4021 0.47 -2.0
1,179,468 - 12389 mRNA_4021 0.53 -1.1
1,179,476 - 12389 mRNA_4021 0.54 0.5
1,179,503 + 12389 mRNA_4021 0.55 -3.1
1,179,605 - 12389 mRNA_4021 0.59 -2.9
1,179,612 + 12389 mRNA_4021 0.59 -2.4
1,180,191 + 12389 mRNA_4021 0.84 0.5
1,180,778 - 12390 mRNA_4022 0.14 -2.0
1,180,806 + 12390 mRNA_4022 0.16 -1.9
1,180,835 + 12390 mRNA_4022 0.19 -0.6