Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4015

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4014: 12382 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 1154900 to 1159801 12382 mRNA_4015: 12383 - K04512 DAAM dishevelled associated activator of morphogenesis, at 1159964 to 1166346 12383 mRNA_4016: 12384 - K01250 rihA pyrimidine-specific ribonucleoside hydrolase, at 1166386 to 1167803 12384

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,159,151 + 12382 mRNA_4014 0.87 -2.2
1,159,151 + 12382 mRNA_4014 0.87 -2.9
1,159,263 - 12382 mRNA_4014 0.89 -3.0
1,159,314 + -0.8
1,159,460 + -2.8
1,159,660 - -0.9
1,159,892 - -2.5
1,159,895 + -0.2
1,160,033 - -2.9
1,160,043 - -0.1
1,160,178 - -1.2
1,161,020 + 12383 mRNA_4015 0.17 -0.9
1,161,389 - 12383 mRNA_4015 0.22 -0.9
1,161,524 + 12383 mRNA_4015 0.24 -2.7
1,161,666 - 12383 mRNA_4015 0.27 -1.1
1,161,989 + 12383 mRNA_4015 0.32 -0.3
1,162,039 + 12383 mRNA_4015 0.33 0.4
1,162,104 + 12383 mRNA_4015 0.34 -0.4
1,162,300 - 12383 mRNA_4015 0.37 -0.8
1,162,801 - 12383 mRNA_4015 0.44 -3.3
1,162,966 - 12383 mRNA_4015 0.47 -1.7
1,162,983 + 12383 mRNA_4015 0.47 -1.7
1,163,136 - 12383 mRNA_4015 0.50 -3.2
1,163,256 + 12383 mRNA_4015 0.52 -0.1
1,163,537 + 12383 mRNA_4015 0.56 -0.5
1,163,575 - 12383 mRNA_4015 0.57 0.6
1,163,747 + 12383 mRNA_4015 0.59 1.0
1,163,797 + 12383 mRNA_4015 0.60 -1.1
1,164,044 - 12383 mRNA_4015 0.64 -0.0
1,164,340 - 12383 mRNA_4015 0.69 -1.3
1,164,559 + 12383 mRNA_4015 0.72 -1.2
1,165,047 + 12383 mRNA_4015 0.80 -3.6
1,165,213 + 12383 mRNA_4015 0.82 -1.5
1,165,216 + 12383 mRNA_4015 0.82 -0.4
1,165,363 - 12383 mRNA_4015 0.85 2.1
1,165,407 + 12383 mRNA_4015 0.85 -1.0
1,165,686 + 12383 mRNA_4015 0.90 -2.0
1,166,114 - -1.5
1,166,212 + 0.2
1,166,657 + 12384 mRNA_4016 0.19 -0.1
1,166,685 - 12384 mRNA_4016 0.21 1.4
1,166,706 + 12384 mRNA_4016 0.23 -1.5
1,166,859 + 12384 mRNA_4016 0.33 0.5
1,166,920 + 12384 mRNA_4016 0.38 -2.5
1,166,991 + 12384 mRNA_4016 0.43 -1.3
1,167,118 + 12384 mRNA_4016 0.52 -0.0