Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4010

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1140211 to 1141922 12377 mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1142539 to 1145554 12378 mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1145939 to 1149704 12379

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,141,655 + 12377 mRNA_4009 0.84 -2.8
1,142,815 - -3.7
1,143,039 - 12378 mRNA_4010 0.17 -1.3
1,143,415 + 12378 mRNA_4010 0.29 -1.1
1,144,469 + 12378 mRNA_4010 0.64 0.8
1,144,724 - 12378 mRNA_4010 0.72 1.7
1,144,904 - 12378 mRNA_4010 0.78 -0.5
1,145,169 - 12378 mRNA_4010 0.87 -0.4
1,145,206 + 12378 mRNA_4010 0.88 -2.7
1,145,284 - -1.4
1,145,477 + 0.3
1,145,632 + -1.8
1,145,634 + -0.6
1,145,757 + -0.3
1,145,761 - -2.7
1,145,919 + -3.6
1,145,929 + 1.0
1,146,039 + -2.0
1,146,051 - -2.4
1,146,494 + 12379 mRNA_4011 0.15 -1.7