Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4007

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4006: 12374 - Hypothetical Protein, at 1133171 to 1133679 12374 mRNA_4007: 12375 - K12373 HEXA_B hexosaminidase, at 1133931 to 1136432 12375 mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1136733 to 1139810 12376

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,133,054 + 1.3
1,133,294 - 12374 mRNA_4006 0.24 -1.0
1,133,957 + -0.4
1,134,425 + 12375 mRNA_4007 0.20 -0.6
1,134,446 - 12375 mRNA_4007 0.21 -2.4
1,134,727 - 12375 mRNA_4007 0.32 -1.2
1,134,974 - 12375 mRNA_4007 0.42 -1.2
1,135,298 - 12375 mRNA_4007 0.55 -0.9
1,135,320 + 12375 mRNA_4007 0.56 -2.1
1,135,749 - 12375 mRNA_4007 0.73 -1.3
1,136,062 - 12375 mRNA_4007 0.85 -2.7
1,136,175 + 12375 mRNA_4007 0.90 -0.8
1,136,180 - 12375 mRNA_4007 0.90 -1.3
1,136,490 - -1.9
1,136,493 - 0.4
1,136,497 - -2.2
1,136,498 - -0.1
1,136,530 + 0.5
1,136,531 + -2.4
1,137,070 + 12376 mRNA_4008 0.11 -2.3