Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3999

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3998: 12366 - HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1110088 to 1111091 12366 mRNA_3999: 12367 - KOG1341 Na+/K+ transporter, at 1111702 to 1115806 12367

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,111,004 + -0.7
1,111,079 + -1.7
1,112,046 - -1.4
1,112,216 - 12367 mRNA_3999 0.13 -1.2
1,112,752 - 12367 mRNA_3999 0.26 -1.9
1,112,780 + 12367 mRNA_3999 0.26 -0.5
1,113,645 - 12367 mRNA_3999 0.47 -1.7
1,113,669 + 12367 mRNA_3999 0.48 0.3
1,113,840 - 12367 mRNA_3999 0.52 -0.5
1,113,966 - 12367 mRNA_3999 0.55 -1.5
1,114,537 + 12367 mRNA_3999 0.69 -1.8
1,114,835 - 12367 mRNA_3999 0.76 -0.9
1,114,850 + 12367 mRNA_3999 0.77 -0.3
1,115,226 - 12367 mRNA_3999 0.86 -1.4
1,115,547 - -3.0
1,115,846 - -0.4
1,115,968 - -2.5
1,115,983 - -2.3
1,116,129 - -1.0
1,116,311 + -1.2
1,116,314 + -0.9
1,116,314 - -1.5
1,116,314 + 0.7
1,116,321 - -2.2
1,116,446 + -0.4
1,116,448 + 0.6
1,116,586 + -2.4
1,116,592 + -1.7
1,116,603 + -2.7