Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3968

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3967: 12335 - KOG1972 Uncharacterized conserved protein, at 1018867 to 1022845 12335 mRNA_3968: 12336 - HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 1022985 to 1024769 12336 mRNA_3969: 12337 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 1025605 to 1026362 12337

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,022,053 - 12335 mRNA_3967 0.80 -3.8
1,022,129 + 12335 mRNA_3967 0.82 -1.7
1,022,743 - -0.5
1,022,754 + 1.3
1,023,011 + -3.5
1,023,610 + 12336 mRNA_3968 0.35 -4.0
1,023,627 + 12336 mRNA_3968 0.36 0.7
1,024,516 - 12336 mRNA_3968 0.86 -2.0
1,024,614 - -0.5
1,024,615 + -0.2
1,024,789 + -3.3
1,025,035 - -0.9
1,025,048 + -0.1
1,025,051 + 1.5
1,025,065 - -3.0
1,025,217 + -2.7
1,025,239 - -1.7
1,025,339 - 0.1
1,025,359 + -0.4
1,025,389 + -1.8
1,025,498 + -0.0