Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3959

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3958: 12326 - Hypothetical Protein, at 997210 to 999982 12326 mRNA_3959: 12327 - K10401 KIF18_19 kinesin family member 18/19, at 1000631 to 1004153 12327 mRNA_3960: 12328 - K14284 NXF, TAP, MEX67 nuclear RNA export factor, at 1004680 to 1007202 12328

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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999,753 + 2.1
999,889 + -1.4
999,905 - -2.2
1,000,159 - 0.8
1,000,198 - -3.5
1,000,649 + -2.8
1,000,652 + 1.7
1,000,791 + -0.1
1,000,950 - -2.9
1,001,112 + 12327 mRNA_3959 0.14 -1.0
1,001,235 - 12327 mRNA_3959 0.17 -1.1
1,001,365 - 12327 mRNA_3959 0.21 -0.2
1,001,434 - 12327 mRNA_3959 0.23 -0.2
1,001,834 + 12327 mRNA_3959 0.34 -0.6
1,002,118 - 12327 mRNA_3959 0.42 -0.9
1,002,123 + 12327 mRNA_3959 0.42 -4.3
1,003,602 + 12327 mRNA_3959 0.84 -2.2
1,003,612 - 12327 mRNA_3959 0.85 -0.3
1,004,136 - -0.4
1,004,190 - -0.3
1,004,330 - -2.8
1,004,450 - -1.8
1,004,456 + -2.7
1,004,588 + 1.7
1,004,602 - -1.4
1,004,604 - -2.7
1,004,625 - -1.7
1,004,631 - -1.9
1,004,633 - -0.3