Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3957

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3956: 12324 - KOG1843 Uncharacterized conserved protein, at 991807 to 993961 12324 mRNA_3957: 12325 - KOG0254 Predicted transporter (major facilitator superfamily), at 994846 to 997069 12325 mRNA_3958: 12326 - Hypothetical Protein, at 997210 to 999982 12326

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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993,996 + -1.5
994,013 + -0.6
994,014 - -2.2
994,019 - -1.2
994,029 + -0.2
994,165 - 0.1
994,166 + -1.7
994,179 + -1.2
994,315 + -0.2
994,318 - 0.7
994,344 + -1.1
994,472 - -2.6
994,500 - -0.4
994,556 - -2.8
994,581 + -1.1
994,597 - -1.4
994,597 + -2.1
994,599 - -1.4
994,604 - -0.7
994,613 - 0.5
994,615 + 0.7
994,624 + -1.1
994,644 - 0.3
994,644 - -2.4
994,645 - 0.1
994,645 + -2.2
994,651 - -0.3
994,660 + -1.8
994,679 + -0.5
994,682 + -1.2
994,686 + 0.5
994,702 - -0.9
994,720 - -0.3
994,720 + -2.2
994,723 + -2.7
994,732 - -3.7
994,735 - -0.1
994,736 - -3.1
994,739 - -2.7
994,741 - -4.6
994,746 + -0.8
994,750 + -2.7
994,757 - -1.2
994,759 + -0.3
994,765 - -0.5
994,796 + -0.3
994,799 + -1.0
994,800 - -0.4
994,870 - 0.7
994,913 - -1.5
994,916 + -1.6
994,917 - -1.5
994,924 - -0.9
994,949 - -0.2
994,957 + -2.3
994,981 - -1.5
995,041 + -0.8
995,046 + 0.7
995,183 - 12325 mRNA_3957 0.15 -0.9
995,201 - 12325 mRNA_3957 0.16 -1.9
996,212 - 12325 mRNA_3957 0.61 -0.4
996,523 + 12325 mRNA_3957 0.75 -2.1
997,073 + -0.4
997,311 - -1.5
997,381 + -0.2
997,566 - 12326 mRNA_3958 0.13 -2.2
997,701 + 12326 mRNA_3958 0.18 1.7
997,710 + 12326 mRNA_3958 0.18 0.9
997,845 - 12326 mRNA_3958 0.23 -1.3