Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3954

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3953: 12321 - Hypothetical Protein, at 983358 to 984692 12321 mRNA_3954: 12322 - KOG1426 FOG RCC1 domain, at 985055 to 988023 12322 mRNA_3955: 12323 - K02355 fusA, GFM, EFG elongation factor G, at 988308 to 991427 12323

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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984,124 + 12321 mRNA_3953 0.57 -2.3
984,503 + 12321 mRNA_3953 0.86 -1.9
984,513 - 12321 mRNA_3953 0.87 -1.8
984,616 - -1.1
984,643 + -3.6
984,645 - -3.0
984,647 - 0.6
984,651 - 0.1
984,659 - -1.9
984,661 - -2.9
984,667 + -1.2
984,667 + -1.5
984,667 + -1.3
984,670 - 0.6
984,799 - -1.2
984,800 + -1.8
984,801 - -2.1
984,805 + -0.9
984,823 - -0.2
984,957 - -1.9
984,971 + -0.2
984,975 - 0.2
984,987 + -1.3
984,995 - -2.2
984,997 + -1.3
985,020 + -1.1
985,060 - -3.4
985,115 - -0.4
985,117 - -0.7
985,253 - -1.1
985,411 - 12322 mRNA_3954 0.12 -2.0
985,439 - 12322 mRNA_3954 0.13 -1.8
985,568 - 12322 mRNA_3954 0.17 -1.9
985,570 + 12322 mRNA_3954 0.17 -0.6
985,704 + 12322 mRNA_3954 0.22 -4.0
986,291 - 12322 mRNA_3954 0.42 -1.2
986,590 + 12322 mRNA_3954 0.52 0.1
986,590 + 12322 mRNA_3954 0.52 -0.8
986,725 - 12322 mRNA_3954 0.56 1.0
987,016 + 12322 mRNA_3954 0.66 -1.4
987,195 + 12322 mRNA_3954 0.72 -0.7
987,300 - 12322 mRNA_3954 0.76 0.0
987,657 + 12322 mRNA_3954 0.88 -3.0
987,847 + -1.7
988,046 + -0.4
988,161 - -0.4
988,164 + 1.4
988,167 + -1.8
988,170 - -0.1
988,174 + -2.3
988,188 + 0.8
988,199 + -1.8