Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3953

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3952: 12320 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 981802 to 983195 12320 mRNA_3953: 12321 - Hypothetical Protein, at 983358 to 984692 12321 mRNA_3954: 12322 - KOG1426 FOG RCC1 domain, at 985055 to 988023 12322

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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982,465 - 12320 mRNA_3952 0.48 -2.2
982,469 - 12320 mRNA_3952 0.48 -0.5
982,476 - 12320 mRNA_3952 0.48 -2.6
982,979 - 12320 mRNA_3952 0.84 0.0
983,188 - -1.5
983,195 + -1.8
983,203 - -0.1
983,307 + -0.2
983,503 + 12321 mRNA_3953 0.11 -3.6
983,656 - 12321 mRNA_3953 0.22 0.2
983,662 + 12321 mRNA_3953 0.23 -0.7
983,918 + 12321 mRNA_3953 0.42 -3.1
984,124 + 12321 mRNA_3953 0.57 -2.3
984,503 + 12321 mRNA_3953 0.86 -1.9
984,513 - 12321 mRNA_3953 0.87 -1.8
984,616 - -1.1
984,643 + -3.6
984,645 - -3.0
984,647 - 0.6
984,651 - 0.1
984,659 - -1.9
984,661 - -2.9
984,667 + -1.2
984,667 + -1.5
984,667 + -1.3
984,670 - 0.6
984,799 - -1.2
984,800 + -1.8
984,801 - -2.1
984,805 + -0.9
984,823 - -0.2
984,957 - -1.9
984,971 + -0.2
984,975 - 0.2
984,987 + -1.3
984,995 - -2.2
984,997 + -1.3
985,020 + -1.1
985,060 - -3.4
985,115 - -0.4
985,117 - -0.7
985,253 - -1.1
985,411 - 12322 mRNA_3954 0.12 -2.0
985,439 - 12322 mRNA_3954 0.13 -1.8
985,568 - 12322 mRNA_3954 0.17 -1.9
985,570 + 12322 mRNA_3954 0.17 -0.6