Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3942

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3941: 12309 - Hypothetical Protein, at 953111 to 953710 12309 mRNA_3942: 12310 - K20298 VPS52 vacuolar protein sorting-associated protein 52, at 954085 to 956912 12310 mRNA_3943: 12311 - K10843 ERCC3, XPB DNA excision repair protein ERCC-3, at 957047 to 960564 12311

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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953,117 - -2.6
953,718 + -2.8
953,722 + -1.7
953,835 - 0.3
953,838 + 0.4
953,850 - -1.0
953,850 + -0.0
953,851 - -1.4
953,853 + -0.4
953,963 - -2.4
953,966 - 0.9
953,978 - -3.0
953,987 + -0.8
953,989 + -3.5
953,990 + -1.7
953,990 + -2.3
953,991 - -2.6
953,992 + -2.0
953,992 - -1.3
953,994 - -1.5
953,999 + 0.7
953,999 + -2.0
954,003 + -3.8
954,166 + -3.7
954,570 + 12310 mRNA_3942 0.17 -2.4
955,491 + 12310 mRNA_3942 0.50 -1.4
956,209 - 12310 mRNA_3942 0.75 -2.0
956,652 - -0.9
956,657 + -1.2
956,950 - -0.5
956,952 + 3.1
956,958 + -0.7
956,968 - -0.6