Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3939

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3938: 12306 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 948000 to 949684 12306 mRNA_3939: 12307 - K13954 yiaY alcohol dehydrogenase, at 950019 to 951719 12307 mRNA_3940: 12308 - KOG3162 Mitochondrial/chloroplast ribosomal protein S18, at 952149 to 952942 12308

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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949,187 + 12306 mRNA_3938 0.70 0.8
949,630 - -0.2
949,728 + -0.9
949,730 - -1.4
949,731 - -0.4
949,748 - -0.8
949,761 + -0.7
949,772 + -1.8
949,865 + -2.3
949,867 - -3.1
949,907 - -2.0
949,921 + -4.3
950,054 + -1.5
950,057 + -1.3
950,214 + 12307 mRNA_3939 0.11 -2.5
950,345 - 12307 mRNA_3939 0.19 -1.4
950,766 - 12307 mRNA_3939 0.44 -0.1
950,923 + 12307 mRNA_3939 0.53 -0.7
951,207 + 12307 mRNA_3939 0.70 -0.0
951,967 + -1.2
952,096 + -2.6
952,100 - -0.0