Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3929

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3928: 12296 - HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486, at 922643 to 925532 12296 mRNA_3929: 12297 - BLAST TKL/TKL-ccin protein kinase [Mycena chlorophos], at 925744 to 929341 12297 mRNA_3930: 12298 - Hypothetical Protein, at 929708 to 931043 12298

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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924,963 + 12296 mRNA_3928 0.80 -0.0
925,369 + 0.5
925,375 - 0.9
925,439 - -1.3
925,488 + -1.0
925,753 - -0.6
925,762 - -1.3
925,770 + 0.6
925,786 - -1.1
925,794 - -2.1
925,796 - -1.2
925,813 - -0.7
925,815 + 0.8
925,824 + -0.6
925,833 + -3.1
925,835 - -1.7
925,838 + -1.8
925,839 - -0.8
925,840 - -0.0
925,841 + -1.2
925,976 - -0.7
926,107 - 12297 mRNA_3929 0.10 -3.5
926,131 - 12297 mRNA_3929 0.11 -3.3
926,161 + 12297 mRNA_3929 0.12 0.5
926,322 + 12297 mRNA_3929 0.16 -2.5
926,702 - 12297 mRNA_3929 0.27 -2.2
926,732 - 12297 mRNA_3929 0.27 -2.0
926,853 - 12297 mRNA_3929 0.31 -0.8
927,558 - 12297 mRNA_3929 0.50 -2.1
927,734 - 12297 mRNA_3929 0.55 -1.6
927,874 - 12297 mRNA_3929 0.59 -1.2
927,901 - 12297 mRNA_3929 0.60 -3.0
928,016 + 12297 mRNA_3929 0.63 -2.7
928,177 + 12297 mRNA_3929 0.68 -1.1
928,445 + 12297 mRNA_3929 0.75 -3.7
928,605 - 12297 mRNA_3929 0.80 -0.9
928,966 + 12297 mRNA_3929 0.90 -0.2
929,190 - -1.3
929,339 + -2.0
929,509 + -4.4
929,762 - 0.8
929,838 + -2.4
929,933 + 12298 mRNA_3930 0.17 -3.2
930,234 + 12298 mRNA_3930 0.39 -0.7
930,240 + 12298 mRNA_3930 0.40 0.1
930,240 + 12298 mRNA_3930 0.40 -0.6