Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3918

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3917: 12285 - KOG4479 Transcription factor e(y)2, at 894031 to 894594 12285 mRNA_3918: 12286 - KOG0024 Sorbitol dehydrogenase, at 895186 to 897368 12286 mRNA_3919: 12287 - KOG4020 Protein DRE2, required for cell viability, at 897887 to 899209 12287

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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894,337 - 12285 mRNA_3917 0.54 -3.3
894,437 - 12285 mRNA_3917 0.72 1.8
894,482 - 12285 mRNA_3917 0.80 -1.4
894,780 + -0.7
894,794 - -1.8
894,915 - 0.3
895,072 + 0.2
895,203 - -2.7
895,626 - 12286 mRNA_3918 0.20 -2.2
895,935 - 12286 mRNA_3918 0.34 1.1
896,369 - 12286 mRNA_3918 0.54 -0.9
896,682 - 12286 mRNA_3918 0.69 -2.1
896,824 - 12286 mRNA_3918 0.75 -1.7
896,858 + 12286 mRNA_3918 0.77 -2.2
897,097 + 12286 mRNA_3918 0.88 -1.1
897,307 - 0.0
897,412 - -2.0
897,415 + 0.4
897,423 + -1.3
897,447 + -0.7
897,545 + -1.2
897,557 + -2.5
897,567 + -1.5
897,602 + -2.0
897,632 - -2.8
897,642 - -2.0
897,642 + -2.0
897,646 + -2.3
897,661 + 0.7
897,675 + -2.0
897,682 - 0.3
897,724 - -2.0
897,725 + -1.9
897,738 + -0.7
897,751 + -2.0
897,754 - -1.2
897,774 + -1.6
897,907 + -0.6