Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3908

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3907: 12275 - Hypothetical Protein, at 869074 to 869751 12275 mRNA_3908: 12276 - Interpro Protein of unknown function (DUF2945), at 870118 to 872012 12276 mRNA_3909: 12277 - K10638 UHRF1, NP95 E3 ubiquitin-protein ligase UHRF1, at 872113 to 873418 12277

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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869,164 - 12275 mRNA_3907 0.13 -4.4
869,182 + 12275 mRNA_3907 0.16 1.4
869,184 - 12275 mRNA_3907 0.16 0.8
869,782 + -1.1
869,885 - 0.1
870,154 + -2.1
870,195 - 0.6
870,272 - -0.9
870,295 - -2.4
870,297 + -0.5
870,321 - 12276 mRNA_3908 0.11 0.8
870,327 - 12276 mRNA_3908 0.11 -2.3
870,328 + 12276 mRNA_3908 0.11 0.5
870,330 + 12276 mRNA_3908 0.11 0.2
870,330 + 12276 mRNA_3908 0.11 -0.5
870,345 + 12276 mRNA_3908 0.12 -1.0
870,347 - 12276 mRNA_3908 0.12 -0.4
870,348 + 12276 mRNA_3908 0.12 0.2
870,348 + 12276 mRNA_3908 0.12 -1.2
870,348 - 12276 mRNA_3908 0.12 0.8
870,375 - 12276 mRNA_3908 0.14 -2.6
870,378 - 12276 mRNA_3908 0.14 0.4
870,403 - 12276 mRNA_3908 0.15 -0.5
870,489 + 12276 mRNA_3908 0.20 -3.6
870,505 + 12276 mRNA_3908 0.20 -2.2
870,509 - 12276 mRNA_3908 0.21 -3.5
870,517 - 12276 mRNA_3908 0.21 -2.9
870,520 - 12276 mRNA_3908 0.21 -1.3
870,531 + 12276 mRNA_3908 0.22 -1.2
870,541 + 12276 mRNA_3908 0.22 -1.0
870,563 - 12276 mRNA_3908 0.23 0.1
870,679 + 12276 mRNA_3908 0.30 -2.0
870,707 + 12276 mRNA_3908 0.31 0.6
870,715 + 12276 mRNA_3908 0.32 -1.8
870,837 - 12276 mRNA_3908 0.38 -1.0
871,015 + 12276 mRNA_3908 0.47 -1.7
871,417 - 12276 mRNA_3908 0.69 -1.6
871,713 + 12276 mRNA_3908 0.84 -0.5
871,874 + -3.2
872,153 + -0.9
872,198 + -0.8
872,611 - 12277 mRNA_3909 0.38 -2.5
872,731 + 12277 mRNA_3909 0.47 -2.8
872,732 - 12277 mRNA_3909 0.47 -0.8
872,773 + 12277 mRNA_3909 0.51 -0.7
872,874 - 12277 mRNA_3909 0.58 -1.3