Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3897

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3896: 12264 - BLAST F-box domain containing protein [Metarhizium maju..., at 844807 to 845932 12264 mRNA_3897: 12265 - K00459 ncd2, npd nitronate monooxygenase, at 846105 to 847395 12265 mRNA_3898: 12266 - HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848183 to 849090 12266

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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845,136 - 12264 mRNA_3896 0.29 0.1
845,300 - 12264 mRNA_3896 0.44 -2.5
845,431 + 12264 mRNA_3896 0.55 -1.8
845,696 + 12264 mRNA_3896 0.79 -1.2
845,729 + 12264 mRNA_3896 0.82 -2.7
845,812 - 12264 mRNA_3896 0.89 -0.9
845,848 + -0.8
846,204 + 1.8
846,456 - 12265 mRNA_3897 0.27 -3.0
846,595 - 12265 mRNA_3897 0.38 -3.8
847,005 + 12265 mRNA_3897 0.70 -2.9
847,323 - -1.3
847,603 - -0.9
847,605 + -1.5
847,617 + -1.5
847,745 - 0.0
847,751 - -2.7
847,756 - -1.9
847,756 + -1.5
847,763 - -0.4
847,769 + 0.4
847,772 + -3.2
847,777 - -2.2
847,787 + -0.8
847,791 + 1.2
847,803 - -2.0
847,825 + -0.0
847,831 - 0.0
847,886 + 0.2
847,905 - -1.6
847,917 - 0.6
847,931 - -0.6
847,933 + -1.1
847,984 - -0.1
848,091 - -1.3
848,310 - 12266 mRNA_3898 0.14 -0.5