Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3896

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3895: 12263 - Hypothetical Protein, at 844130 to 844681 12263 mRNA_3896: 12264 - BLAST F-box domain containing protein [Metarhizium maju..., at 844807 to 845932 12264 mRNA_3897: 12265 - K00459 ncd2, npd nitronate monooxygenase, at 846105 to 847395 12265

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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843,908 - -0.8
843,941 + 1.0
844,047 - -1.5
844,055 - 0.2
844,056 + -1.0
844,071 + -2.9
844,143 + -2.7
844,198 + 12263 mRNA_3895 0.12 -0.4
844,332 - 12263 mRNA_3895 0.37 0.3
844,340 + 12263 mRNA_3895 0.38 -0.8
844,365 - 12263 mRNA_3895 0.43 -0.5
844,370 - 12263 mRNA_3895 0.43 -0.2
844,371 + 12263 mRNA_3895 0.44 -0.9
844,385 + 12263 mRNA_3895 0.46 -3.1
844,392 + 12263 mRNA_3895 0.47 -1.4
844,410 - 12263 mRNA_3895 0.51 -2.6
844,423 - 12263 mRNA_3895 0.53 0.7
844,543 + 12263 mRNA_3895 0.75 -1.2
844,665 - -0.4
844,671 - -0.4
844,678 + -3.1
844,699 + -1.3
844,708 + 0.0
844,709 + 0.0
844,711 - 0.6
844,713 + 1.0
845,136 - 12264 mRNA_3896 0.29 0.1
845,300 - 12264 mRNA_3896 0.44 -2.5
845,431 + 12264 mRNA_3896 0.55 -1.8
845,696 + 12264 mRNA_3896 0.79 -1.2
845,729 + 12264 mRNA_3896 0.82 -2.7
845,812 - 12264 mRNA_3896 0.89 -0.9
845,848 + -0.8
846,204 + 1.8
846,456 - 12265 mRNA_3897 0.27 -3.0
846,595 - 12265 mRNA_3897 0.38 -3.8