Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3894

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3893: 12261 - K07375 TUBB tubulin beta, at 839639 to 842065 12261 mRNA_3894: 12262 - SUPERFAMILY--SSF54695, at 842449 to 843578 12262 mRNA_3895: 12263 - Hypothetical Protein, at 844130 to 844681 12263

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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841,690 + 12261 mRNA_3893 0.85 -2.7
841,839 - -1.6
841,853 + -2.9
842,129 - -3.0
842,143 + -3.5
842,151 + -2.1
842,165 + -0.6
842,169 + -0.7
842,172 + 1.0
842,750 + 12262 mRNA_3894 0.27 -0.2
842,769 + 12262 mRNA_3894 0.28 -2.2
842,850 + 12262 mRNA_3894 0.35 -2.1
842,899 + 12262 mRNA_3894 0.40 -1.9
843,200 - 12262 mRNA_3894 0.66 -0.6
843,417 - 12262 mRNA_3894 0.86 -2.1
843,474 + -3.3
843,479 - -1.3
843,481 + -1.9
843,481 + 0.4
843,606 - -2.7
843,621 - 1.3
843,623 - -0.3
843,627 + -2.6
843,647 - -1.2
843,723 - 0.6
843,747 - -1.2
843,757 - -1.9
843,908 - -0.8
843,941 + 1.0
844,047 - -1.5
844,055 - 0.2
844,056 + -1.0
844,071 + -2.9
844,143 + -2.7
844,198 + 12263 mRNA_3895 0.12 -0.4
844,332 - 12263 mRNA_3895 0.37 0.3
844,340 + 12263 mRNA_3895 0.38 -0.8
844,365 - 12263 mRNA_3895 0.43 -0.5
844,370 - 12263 mRNA_3895 0.43 -0.2
844,371 + 12263 mRNA_3895 0.44 -0.9
844,385 + 12263 mRNA_3895 0.46 -3.1
844,392 + 12263 mRNA_3895 0.47 -1.4
844,410 - 12263 mRNA_3895 0.51 -2.6
844,423 - 12263 mRNA_3895 0.53 0.7
844,543 + 12263 mRNA_3895 0.75 -1.2