Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3890

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3889: 12257 - K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase, at 831384 to 832562 12257 mRNA_3890: 12258 - HMMPfam-Pal1 cell morphology protein-PF08316, at 832975 to 835014 12258 mRNA_3891: 12259 - K07889 RAB5C Ras-related protein Rab-5C, at 835230 to 836530 12259

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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832,169 + 12257 mRNA_3889 0.67 1.2
832,174 - 12257 mRNA_3889 0.67 -2.6
832,205 + 12257 mRNA_3889 0.70 -1.2
832,208 + 12257 mRNA_3889 0.70 -2.6
832,361 + 12257 mRNA_3889 0.83 -0.7
832,362 + 12257 mRNA_3889 0.83 -1.4
832,500 - -2.8
832,510 + -2.3
832,661 - -1.9
832,679 + -2.8
832,705 + -0.6
832,797 + -0.8
832,820 + -2.7
832,826 - -0.2
832,847 - 1.1
833,073 + -1.2
833,532 - 12258 mRNA_3890 0.27 1.0
833,848 - 12258 mRNA_3890 0.43 -2.0
833,959 + 12258 mRNA_3890 0.48 -4.5
834,004 - 12258 mRNA_3890 0.50 -2.5
834,111 - 12258 mRNA_3890 0.56 -3.5
834,415 - 12258 mRNA_3890 0.71 -1.4
834,529 - 12258 mRNA_3890 0.76 -0.4
834,560 - 12258 mRNA_3890 0.78 -2.3
834,566 - 12258 mRNA_3890 0.78 -1.1
834,579 - 12258 mRNA_3890 0.79 -0.9
834,593 + 12258 mRNA_3890 0.79 -2.2
834,729 + 12258 mRNA_3890 0.86 -2.4
834,734 - 12258 mRNA_3890 0.86 -2.5
834,876 - -1.0
834,878 - -2.4
834,894 - -2.6
834,896 - -3.1
834,901 + -1.6
834,916 + 0.3
835,005 - -3.0
835,020 - -3.8
835,037 + -1.8
835,049 + -2.1
835,058 - -2.8
835,064 - -1.7
835,079 + -2.3
835,189 - -3.0
835,655 + 12259 mRNA_3891 0.33 0.2
835,919 - 12259 mRNA_3891 0.53 -1.4
835,958 - 12259 mRNA_3891 0.56 0.0