Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3887

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823913 to 825750 12254 mRNA_3887: 12255 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 826218 to 829062 12255 mRNA_3888: 12256 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 829400 to 831173 12256

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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825,459 + 12254 mRNA_3886 0.84 0.3
825,879 - -0.8
825,896 + -3.6
825,896 + 0.5
825,897 - 1.6
825,908 - -1.9
825,927 - -0.6
825,934 + 1.4
825,939 + -1.6
826,041 + -0.8
826,049 + -0.1
826,050 - -1.2
826,052 + -0.3
826,122 + 0.1
826,138 - -1.8
826,149 - -1.8
826,156 + -3.0
826,157 - 3.5
826,169 - 0.3
826,302 + -2.7
826,307 - -2.1
826,338 + -0.4
826,451 + -0.6
826,464 + -0.8
826,470 - -2.1
826,489 - -0.6
826,594 - 12255 mRNA_3887 0.13 -3.7
826,627 + 12255 mRNA_3887 0.14 -0.1
826,764 + 12255 mRNA_3887 0.19 -1.8
827,181 - 12255 mRNA_3887 0.34 -1.6
827,217 - 12255 mRNA_3887 0.35 -3.1
827,227 + 12255 mRNA_3887 0.35 -2.6
827,284 + 12255 mRNA_3887 0.37 -2.2
827,480 + 12255 mRNA_3887 0.44 -0.6
827,726 + 12255 mRNA_3887 0.53 -3.0
827,842 + 12255 mRNA_3887 0.57 -0.2
827,991 - 12255 mRNA_3887 0.62 -0.5
828,208 + 12255 mRNA_3887 0.70 -1.5
828,736 - 12255 mRNA_3887 0.89 -2.0
829,062 - -4.0
829,239 - -0.6
829,240 + 0.8
829,280 + -0.5
829,390 - -0.2
829,646 + 12256 mRNA_3888 0.14 0.1
829,710 + 12256 mRNA_3888 0.17 -2.4
829,812 - 12256 mRNA_3888 0.23 0.1