Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3883

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3882: 12250 - Hypothetical Protein, at 815200 to 816864 12250 mRNA_3883: 12251 - K01784 galE, GALE UDP-glucose 4-epimerase, at 817567 to 820111 12251 mRNA_3884: 12252 - Hypothetical Protein, at 820246 to 821511 12252

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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816,591 - 12250 mRNA_3882 0.84 -1.7
816,601 + 12250 mRNA_3882 0.84 -3.9
816,851 + -2.8
816,857 + -3.6
816,865 + -3.2
816,904 - -0.1
816,915 - 0.2
817,016 + -1.9
817,037 - 0.1
817,040 + -0.4
817,041 - 0.0
817,054 - -1.9
817,060 - -2.1
817,063 + 0.1
817,068 + -0.5
817,068 + -0.4
817,104 + -2.4
817,111 + -3.5
817,112 - -0.0
817,115 + -0.4
817,133 + -0.4
817,141 + -1.2
817,161 - -0.4
817,168 + -2.6
817,169 - -1.6
817,179 + -2.3
817,183 - -3.7
817,195 - -1.6
817,196 + -0.6
817,201 + -0.9
817,274 - -1.0
817,344 + 2.5
817,351 + -1.6
817,372 + -1.3
817,383 + 0.0
817,489 - -0.5
817,501 - -0.8
817,503 + -2.5
817,512 + -1.0
817,518 - -3.9
817,623 - -0.0
817,646 + -1.4
817,651 + -0.6
817,660 + -1.2
817,694 + -1.6
817,831 - 12251 mRNA_3883 0.10 -0.7
817,909 - 12251 mRNA_3883 0.13 -1.3
817,968 + 12251 mRNA_3883 0.16 -2.1
817,975 + 12251 mRNA_3883 0.16 -2.0
818,098 - 12251 mRNA_3883 0.21 -1.5
818,266 + 12251 mRNA_3883 0.27 0.0
818,463 - 12251 mRNA_3883 0.35 -0.1
818,676 - 12251 mRNA_3883 0.44 -1.6
818,697 - 12251 mRNA_3883 0.44 -1.4
818,829 + 12251 mRNA_3883 0.50 -2.9
818,832 - 12251 mRNA_3883 0.50 -1.8
818,875 + 12251 mRNA_3883 0.51 -1.6
819,026 + 12251 mRNA_3883 0.57 -0.6
819,307 + 12251 mRNA_3883 0.68 0.7
819,623 - 12251 mRNA_3883 0.81 -1.5
820,020 + -0.7
820,055 - -1.8
820,162 + -2.9
820,203 + 1.3
820,328 - 0.3
820,351 + -3.8
820,560 + 12252 mRNA_3884 0.25 -1.4
820,587 - 12252 mRNA_3884 0.27 -0.6
820,658 - 12252 mRNA_3884 0.33 -2.6
820,914 + 12252 mRNA_3884 0.53 -0.3
820,927 - 12252 mRNA_3884 0.54 -2.6
821,072 + 12252 mRNA_3884 0.65 -2.5