Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3880

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3879: 12247 - Interpro Selenoprotein SelK_SelG, at 811174 to 811650 12247 mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812217 to 813988 12248 mRNA_3881: 12249 - Hypothetical Protein, at 814368 to 814862 12249

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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811,271 + 12247 mRNA_3879 0.20 -1.9
811,297 - 12247 mRNA_3879 0.26 -0.2
811,303 - 12247 mRNA_3879 0.27 -0.6
811,593 - 12247 mRNA_3879 0.88 -2.2
811,603 - -2.8
811,625 + 0.6
812,620 + 12248 mRNA_3880 0.23 0.6
812,764 + 12248 mRNA_3880 0.31 -1.4
812,788 + 12248 mRNA_3880 0.32 -0.9
813,371 - 12248 mRNA_3880 0.65 -2.7
813,668 + 12248 mRNA_3880 0.82 -1.5
813,906 - -3.4
813,937 + -2.6
814,071 + -0.4
814,073 + -1.0
814,079 - -3.0
814,086 - -0.0
814,086 - 1.0
814,093 - 0.1
814,094 + -3.0
814,095 + -1.8
814,098 - -0.1
814,110 - -2.9
814,113 + -0.3
814,119 - -0.3
814,121 + -3.0
814,128 + -1.1
814,137 - -1.4
814,138 - -0.4
814,144 + -1.3
814,152 - -2.0
814,154 - -0.3
814,162 + -2.1
814,162 - -2.8
814,171 - -2.3
814,189 - 0.0
814,197 + -1.2
814,304 + 1.5
814,305 - -2.8
814,316 + -0.9
814,317 - -0.3
814,320 - -1.9
814,333 + -0.3
814,334 + -0.2
814,356 + 0.3
814,386 - -2.8
814,398 - -2.2
814,402 - 0.4
814,405 + -0.8
814,421 - 12249 mRNA_3881 0.11 -1.1
814,422 + 12249 mRNA_3881 0.11 -0.8
814,472 - 12249 mRNA_3881 0.21 -2.8
814,477 + 12249 mRNA_3881 0.22 -3.2
814,478 - 12249 mRNA_3881 0.22 -1.9
814,492 - 12249 mRNA_3881 0.25 -1.5
814,492 + 12249 mRNA_3881 0.25 -2.8
814,499 + 12249 mRNA_3881 0.26 -3.3
814,506 - 12249 mRNA_3881 0.28 -0.7
814,529 - 12249 mRNA_3881 0.33 -3.2
814,539 + 12249 mRNA_3881 0.35 0.4
814,582 - 12249 mRNA_3881 0.43 -2.1
814,651 - 12249 mRNA_3881 0.57 -1.6
814,799 - 12249 mRNA_3881 0.87 -1.2
814,806 - 12249 mRNA_3881 0.88 -1.7
814,806 - 12249 mRNA_3881 0.88 -1.3
814,942 + -0.7
814,943 - -2.5
814,951 - -2.9
814,973 + -1.9