Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3873

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794856 to 799909 12240 mRNA_3873: 12241 - BLAST putative protein [Neurospora crassa], at 800106 to 800939 12241 mRNA_3874: 12242 - KOG1535 Predicted fumarylacetoacetate hydralase, at 801011 to 802122 12242

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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799,203 - 12240 mRNA_3872 0.86 -2.2
799,207 - 12240 mRNA_3872 0.86 -1.1
799,606 - -0.3
800,119 + -2.9
800,362 - 12241 mRNA_3873 0.31 -1.9
800,372 + 12241 mRNA_3873 0.32 0.5
800,537 - 12241 mRNA_3873 0.52 -0.3
800,689 - 12241 mRNA_3873 0.70 -2.3
800,696 + 12241 mRNA_3873 0.71 -2.9
800,696 + 12241 mRNA_3873 0.71 -1.2
800,729 + 12241 mRNA_3873 0.75 -1.1
800,781 - 12241 mRNA_3873 0.81 -1.9
800,841 - 12241 mRNA_3873 0.88 0.1
800,845 + 12241 mRNA_3873 0.89 -0.5
800,881 - 0.2
800,960 - -0.5
801,017 + -2.1
801,111 - 0.0
801,117 + -0.4
801,134 + 12242 mRNA_3874 0.11 -1.5
801,141 + 12242 mRNA_3874 0.12 -2.4
801,387 - 12242 mRNA_3874 0.34 -2.1
801,414 - 12242 mRNA_3874 0.36 -2.2
801,831 + 12242 mRNA_3874 0.74 -3.4
801,837 - 12242 mRNA_3874 0.74 -0.5
801,844 + 12242 mRNA_3874 0.75 -1.2
801,860 + 12242 mRNA_3874 0.76 -0.6