Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3872

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792939 to 793930 12239 mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794856 to 799909 12240 mRNA_3873: 12241 - BLAST putative protein [Neurospora crassa], at 800106 to 800939 12241

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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794,074 + -0.8
794,101 + -1.7
794,101 + -0.6
794,193 + -0.0
794,211 - -1.3
794,484 - -2.3
794,488 - -2.8
794,500 + -1.0
794,657 - -1.1
794,671 - 0.1
794,673 + -3.6
794,691 - -0.7
794,696 - 1.7
794,841 + -2.5
794,972 + 0.1
794,974 + 1.4
794,983 - -1.9
794,997 + 0.1
795,115 - -2.1
795,166 - -1.4
795,552 + 12240 mRNA_3872 0.14 -1.5
795,582 - 12240 mRNA_3872 0.14 1.1
795,726 + 12240 mRNA_3872 0.17 -0.5
795,912 + 12240 mRNA_3872 0.21 -2.6
796,154 + 12240 mRNA_3872 0.26 0.1
796,297 - 12240 mRNA_3872 0.29 -0.7
796,314 + 12240 mRNA_3872 0.29 -1.3
796,410 + 12240 mRNA_3872 0.31 -4.4
796,428 - 12240 mRNA_3872 0.31 -1.4
796,446 + 12240 mRNA_3872 0.31 -0.3
796,446 + 12240 mRNA_3872 0.31 0.7
796,811 + 12240 mRNA_3872 0.39 -0.3
796,989 + 12240 mRNA_3872 0.42 -1.6
797,701 + 12240 mRNA_3872 0.56 -2.7
797,756 - 12240 mRNA_3872 0.57 -1.9
797,990 + 12240 mRNA_3872 0.62 -1.5
798,444 - 12240 mRNA_3872 0.71 0.5
798,501 - 12240 mRNA_3872 0.72 -1.0
798,721 + 12240 mRNA_3872 0.76 -0.5
798,736 + 12240 mRNA_3872 0.77 -0.5
798,910 + 12240 mRNA_3872 0.80 -3.4
799,203 - 12240 mRNA_3872 0.86 -2.2
799,207 - 12240 mRNA_3872 0.86 -1.1
799,606 - -0.3
800,119 + -2.9
800,362 - 12241 mRNA_3873 0.31 -1.9
800,372 + 12241 mRNA_3873 0.32 0.5
800,537 - 12241 mRNA_3873 0.52 -0.3
800,689 - 12241 mRNA_3873 0.70 -2.3
800,696 + 12241 mRNA_3873 0.71 -2.9
800,696 + 12241 mRNA_3873 0.71 -1.2
800,729 + 12241 mRNA_3873 0.75 -1.1
800,781 - 12241 mRNA_3873 0.81 -1.9
800,841 - 12241 mRNA_3873 0.88 0.1
800,845 + 12241 mRNA_3873 0.89 -0.5
800,881 - 0.2