Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3870

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3869: 12237 - KOG3207 Beta-tubulin folding cofactor E, at 787277 to 789620 12237 mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789914 to 792634 12238 mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792939 to 793930 12239

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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788,930 - 12237 mRNA_3869 0.71 -1.3
788,964 + 12237 mRNA_3869 0.72 -1.9
789,098 - 12237 mRNA_3869 0.78 -0.1
789,228 + 12237 mRNA_3869 0.83 -0.5
789,386 + 1.0
789,394 + -3.9
789,395 + -1.4
789,709 - -0.2
789,719 + -2.1
789,844 - -0.8
790,002 + -0.5
790,309 - 12238 mRNA_3870 0.15 -1.3
790,350 - 12238 mRNA_3870 0.16 -0.1
790,482 + 12238 mRNA_3870 0.21 -1.6
790,616 - 12238 mRNA_3870 0.26 -0.6
790,656 + 12238 mRNA_3870 0.27 -1.5
790,693 - 12238 mRNA_3870 0.29 -1.7
790,853 + 12238 mRNA_3870 0.35 -3.4
790,879 + 12238 mRNA_3870 0.35 -0.3
791,360 - 12238 mRNA_3870 0.53 -2.1
791,396 + 12238 mRNA_3870 0.54 -1.3
791,694 + 12238 mRNA_3870 0.65 -1.3
791,837 + 12238 mRNA_3870 0.71 -2.2
791,838 - 12238 mRNA_3870 0.71 -0.7
791,928 + 12238 mRNA_3870 0.74 1.9
792,079 - 12238 mRNA_3870 0.80 -1.3
792,143 + 12238 mRNA_3870 0.82 -1.6
792,238 - 12238 mRNA_3870 0.85 -0.1
792,240 + 12238 mRNA_3870 0.85 -0.1
792,245 - 12238 mRNA_3870 0.86 -1.4
792,246 - 12238 mRNA_3870 0.86 -0.9
792,264 - 12238 mRNA_3870 0.86 -0.5
792,403 - -2.4
792,405 + -1.5
792,419 + -1.6
792,420 - -1.2
792,548 + -0.9
792,553 + -0.2
792,560 - -0.1
792,595 - -0.9
792,608 - -1.2
792,680 - -0.8
792,698 - -0.7
792,700 - -2.2
792,731 - -0.0
792,733 + -1.4
792,757 - -0.3
792,765 + -0.3
792,856 + -2.5
792,879 + -1.7
792,900 - -2.4
792,938 - -2.2
792,950 - -1.3
792,951 + -3.0
793,072 + 12239 mRNA_3871 0.13 -2.5
793,240 - 12239 mRNA_3871 0.30 -3.6
793,269 - 12239 mRNA_3871 0.33 -0.3
793,361 + 12239 mRNA_3871 0.43 -1.8
793,376 - 12239 mRNA_3871 0.44 0.6
793,423 + 12239 mRNA_3871 0.49 -2.1
793,449 - 12239 mRNA_3871 0.51 -0.9
793,491 - 12239 mRNA_3871 0.56 -1.2
793,498 - 12239 mRNA_3871 0.56 -2.7
793,506 + 12239 mRNA_3871 0.57 -1.1
793,507 + 12239 mRNA_3871 0.57 -2.2
793,518 + 12239 mRNA_3871 0.58 -1.2
793,525 + 12239 mRNA_3871 0.59 0.5