Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3869

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3868: 12236 - KOG0603 Ribosomal protein S6 kinase, at 783972 to 787068 12236 mRNA_3869: 12237 - KOG3207 Beta-tubulin folding cofactor E, at 787277 to 789620 12237 mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789914 to 792634 12238

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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786,467 + 12236 mRNA_3868 0.81 -1.4
786,632 + 12236 mRNA_3868 0.86 -0.9
786,635 - 12236 mRNA_3868 0.86 -4.0
787,396 - 1.3
787,779 - 12237 mRNA_3869 0.21 -1.8
788,134 - 12237 mRNA_3869 0.37 -3.2
788,237 - 12237 mRNA_3869 0.41 -1.7
788,378 - 12237 mRNA_3869 0.47 -1.9
788,379 + 12237 mRNA_3869 0.47 -1.8
788,384 - 12237 mRNA_3869 0.47 -1.4
788,667 - 12237 mRNA_3869 0.59 -2.9
788,859 - 12237 mRNA_3869 0.67 -3.3
788,930 - 12237 mRNA_3869 0.71 -1.3
788,964 + 12237 mRNA_3869 0.72 -1.9
789,098 - 12237 mRNA_3869 0.78 -0.1
789,228 + 12237 mRNA_3869 0.83 -0.5
789,386 + 1.0
789,394 + -3.9
789,395 + -1.4
789,709 - -0.2
789,719 + -2.1
789,844 - -0.8
790,002 + -0.5
790,309 - 12238 mRNA_3870 0.15 -1.3
790,350 - 12238 mRNA_3870 0.16 -0.1
790,482 + 12238 mRNA_3870 0.21 -1.6
790,616 - 12238 mRNA_3870 0.26 -0.6