Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3868

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3867: 12235 - KOG1812 Predicted E3 ubiquitin ligase, at 782825 to 783717 12235 mRNA_3868: 12236 - KOG0603 Ribosomal protein S6 kinase, at 783972 to 787068 12236 mRNA_3869: 12237 - KOG3207 Beta-tubulin folding cofactor E, at 787277 to 789620 12237

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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783,011 - 12235 mRNA_3867 0.21 -2.9
783,491 + 12235 mRNA_3867 0.75 -0.2
783,625 - 12235 mRNA_3867 0.90 0.4
783,695 - -1.3
783,702 + -2.0
783,709 - -1.1
783,736 + -1.3
783,742 + 0.7
783,751 + 0.4
783,770 + -0.9
783,777 + -1.7
783,781 - -2.0
783,933 - -0.8
783,934 - -3.5
783,938 - -0.5
783,952 + -1.2
783,966 + -1.3
784,120 + 0.7
784,251 + -0.4
784,414 + 12236 mRNA_3868 0.14 0.1
784,586 + 12236 mRNA_3868 0.20 -2.8
784,742 + 12236 mRNA_3868 0.25 -1.9
784,995 - 12236 mRNA_3868 0.33 -2.5
785,017 - 12236 mRNA_3868 0.34 -2.9
785,215 + 12236 mRNA_3868 0.40 -1.2
785,215 + 12236 mRNA_3868 0.40 -0.6
785,218 - 12236 mRNA_3868 0.40 -2.7
785,289 - 12236 mRNA_3868 0.43 -2.2
785,639 - 12236 mRNA_3868 0.54 -2.0
785,912 - 12236 mRNA_3868 0.63 -1.7
785,917 - 12236 mRNA_3868 0.63 0.9
785,972 - 12236 mRNA_3868 0.65 -2.8
786,053 + 12236 mRNA_3868 0.67 -1.0
786,166 - 12236 mRNA_3868 0.71 -2.2
786,170 + 12236 mRNA_3868 0.71 -2.3
786,467 + 12236 mRNA_3868 0.81 -1.4
786,632 + 12236 mRNA_3868 0.86 -0.9
786,635 - 12236 mRNA_3868 0.86 -4.0
787,396 - 1.3
787,779 - 12237 mRNA_3869 0.21 -1.8