Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3858

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3857: 12225 - Interpro Mysoin-binding motif of peroxisomes, at 754082 to 757282 12225 mRNA_3858: 12226 - K17890 ATG16L1 autophagy-related protein 16-1, at 757885 to 761783 12226 mRNA_3859: 12227 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 762082 to 763041 12227

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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756,935 - 12225 mRNA_3857 0.89 -0.4
757,046 + -1.8
757,414 + 0.2
757,514 - -0.8
757,514 + -1.2
757,681 + -0.5
757,945 - -2.5
757,947 - 1.7
758,100 + -3.1
758,250 - -0.2
758,293 + 12226 mRNA_3858 0.10 -1.3
758,873 - 12226 mRNA_3858 0.25 0.3
758,885 + 12226 mRNA_3858 0.26 -1.4
758,993 - 12226 mRNA_3858 0.28 1.1
758,994 + 12226 mRNA_3858 0.28 -2.6
759,151 + 12226 mRNA_3858 0.32 -1.5
759,173 - 12226 mRNA_3858 0.33 -2.8
759,307 + 12226 mRNA_3858 0.36 -2.5
759,844 + 12226 mRNA_3858 0.50 -3.2
759,881 + 12226 mRNA_3858 0.51 1.0
759,896 + 12226 mRNA_3858 0.52 -0.8
759,915 + 12226 mRNA_3858 0.52 -3.4
760,012 + 12226 mRNA_3858 0.55 -1.2
761,221 + 12226 mRNA_3858 0.86 0.1
761,481 - -2.4
761,511 - -0.2
761,590 - 0.7
761,650 + -2.9
761,838 + -3.1
762,365 - 12227 mRNA_3859 0.29 -0.4
762,366 + 12227 mRNA_3859 0.30 -1.9
762,379 + 12227 mRNA_3859 0.31 -2.8
762,413 - 12227 mRNA_3859 0.34 -2.6
762,552 + 12227 mRNA_3859 0.49 -2.0
762,570 + 12227 mRNA_3859 0.51 -1.0
762,669 - 12227 mRNA_3859 0.61 -3.6