Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3846

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726085 to 727619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728608 to 730842 12214

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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727,698 + 0.3
727,699 - -1.7
727,711 + 0.2
727,712 - -0.3
727,827 + -1.5
727,842 + -0.5
727,992 - -1.5
728,001 + -0.6
728,007 + -1.5
728,022 - -0.5
728,030 + 0.6
728,260 + -2.5
728,278 - -0.9
728,279 - -2.0
728,282 + -2.8
728,287 - -0.8
728,299 - -0.9
728,308 + -2.3
728,314 + -1.4
728,432 - -2.6
728,436 - -0.1
728,437 + -0.2
728,466 + -2.8
728,590 - -2.5
728,738 - -1.7
728,748 + -0.1
728,751 + -1.0
728,757 + 0.3
729,063 + 12214 mRNA_3846 0.20 -0.2
729,087 + 12214 mRNA_3846 0.21 -1.5
729,104 + 12214 mRNA_3846 0.22 0.4
729,164 - 12214 mRNA_3846 0.25 -1.0
729,239 - 12214 mRNA_3846 0.28 0.0
729,595 + 12214 mRNA_3846 0.44 -1.3
729,788 + 12214 mRNA_3846 0.53 -0.8
729,860 - 12214 mRNA_3846 0.56 -0.1
729,951 - 12214 mRNA_3846 0.60 -1.2
730,049 - 12214 mRNA_3846 0.64 -2.3
730,082 + 12214 mRNA_3846 0.66 0.1
730,195 - 12214 mRNA_3846 0.71 -0.8
730,366 - 12214 mRNA_3846 0.79 -1.9
730,617 - 12214 mRNA_3846 0.90 -3.3
731,348 + 0.0
731,452 - -0.8
731,673 + -2.8
731,726 - -2.1
731,785 - -1.4