Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3845

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723329 to 725612 12212 mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726085 to 727619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728608 to 730842 12214

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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725,810 - -1.6
725,826 - 0.2
725,831 - -0.8
725,966 - -1.2
725,990 - -3.4
726,093 + -0.4
726,278 + 12213 mRNA_3845 0.13 -3.3
726,552 - 12213 mRNA_3845 0.30 0.2
726,565 - 12213 mRNA_3845 0.31 -0.0
726,597 + 12213 mRNA_3845 0.33 -2.1
726,987 + 12213 mRNA_3845 0.59 -0.2
727,271 - 12213 mRNA_3845 0.77 -0.3
727,403 + 12213 mRNA_3845 0.86 -3.2
727,558 + -1.8
727,698 + 0.3
727,699 - -1.7
727,711 + 0.2
727,712 - -0.3
727,827 + -1.5
727,842 + -0.5
727,992 - -1.5
728,001 + -0.6
728,007 + -1.5
728,022 - -0.5
728,030 + 0.6
728,260 + -2.5
728,278 - -0.9
728,279 - -2.0
728,282 + -2.8
728,287 - -0.8
728,299 - -0.9
728,308 + -2.3
728,314 + -1.4
728,432 - -2.6
728,436 - -0.1
728,437 + -0.2
728,466 + -2.8
728,590 - -2.5