Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3818

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3817: 12185 - SUPERFAMILY--SSF52047, at 655525 to 657844 12185 mRNA_3818: 12186 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 657932 to 659126 12186 mRNA_3819: 12187 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 659390 to 660393 12187

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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656,934 + 12185 mRNA_3817 0.61 -2.0
656,958 - 12185 mRNA_3817 0.62 -0.5
656,961 - 12185 mRNA_3817 0.62 0.3
656,962 + 12185 mRNA_3817 0.62 -0.1
657,027 + 12185 mRNA_3817 0.65 -3.6
657,222 - 12185 mRNA_3817 0.73 -3.6
657,234 + 12185 mRNA_3817 0.74 -3.1
657,235 + 12185 mRNA_3817 0.74 -1.3
657,433 - 12185 mRNA_3817 0.82 -1.0
657,438 - 12185 mRNA_3817 0.82 -1.1
657,676 - -1.6
657,704 - -1.1
658,049 - -2.8
658,118 - 12186 mRNA_3818 0.16 -1.6
658,122 + 12186 mRNA_3818 0.16 0.1
658,455 - 12186 mRNA_3818 0.44 0.4
658,649 - 12186 mRNA_3818 0.60 -2.0
658,729 - 12186 mRNA_3818 0.67 0.6
658,843 - 12186 mRNA_3818 0.76 -0.4
658,882 - 12186 mRNA_3818 0.79 -0.7
658,885 + 12186 mRNA_3818 0.80 -1.2
658,978 - 12186 mRNA_3818 0.88 -1.9
659,016 - -3.1
659,059 + -2.9
659,175 - -1.2
659,194 + 2.5
659,476 - -2.2
659,909 - 12187 mRNA_3819 0.52 -2.4