Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3793

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3792: 12160 - K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5, at 590008 to 594469 12160 mRNA_3793: 12161 - K15528 FAAH fatty acid amide hydrolase, at 594813 to 596952 12161 mRNA_3794: 12162 - KOG4618 Uncharacterized conserved protein, at 597131 to 597697 12162 mRNA_3795: 12163 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 597927 to 600358 12163

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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593,957 - 12160 mRNA_3792 0.89 0.1
594,532 + 0.9
594,552 - 2.1
594,555 - -2.1
594,564 - -1.0
594,565 - -3.0
594,568 + -1.4
594,568 + -0.6
594,704 - 1.5
594,721 + -2.1
594,722 + 0.1
594,722 + -1.4
594,723 - -1.0
594,723 - -2.5
594,728 + 0.2
594,731 - -0.5
594,731 + -1.1
594,733 - -0.9
594,734 + -1.0
594,741 + -3.1
594,744 + -3.1
594,887 - -3.3
594,900 - -4.4
594,904 + -2.0
595,044 - 12161 mRNA_3793 0.11 -1.3
595,520 + 12161 mRNA_3793 0.33 -2.9
595,654 - 12161 mRNA_3793 0.39 -2.4
595,932 + 12161 mRNA_3793 0.52 -1.2
596,346 - 12161 mRNA_3793 0.72 -1.2
596,488 - 12161 mRNA_3793 0.78 -0.6
596,506 + 12161 mRNA_3793 0.79 1.1
596,714 + 12161 mRNA_3793 0.89 -0.8
596,767 + -2.8
596,908 - -0.1
596,924 + 0.1
597,206 - 12162 mRNA_3794 0.13 -1.4
597,617 - 12162 mRNA_3794 0.86 -2.8
597,767 - -2.2
597,776 - -0.1
597,782 - -1.4
597,792 - -3.1
597,792 - -1.8
597,798 - -2.6