Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3786

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3785: 12153 - K15178 RTF1 RNA polymerase-associated protein RTF1, at 575682 to 577961 12153 mRNA_3786: 12154 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 578477 to 580207 12154 mRNA_3787: 12155 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 581185 to 583154 12155

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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578,064 + -0.8
578,071 - -0.9
578,079 + -0.6
578,086 - -1.3
578,096 + -1.3
578,102 + -1.4
578,201 - -3.1
578,223 + -2.1
578,943 - 12154 mRNA_3786 0.27 -2.4
579,517 - 12154 mRNA_3786 0.60 0.2
579,530 + 12154 mRNA_3786 0.61 -1.2
579,651 - 12154 mRNA_3786 0.68 -2.0
579,775 - 12154 mRNA_3786 0.75 -3.1
579,932 - 12154 mRNA_3786 0.84 -1.6
579,966 - 12154 mRNA_3786 0.86 -2.5
580,073 - -1.6
580,256 + -0.7
580,264 + -2.0
580,386 - 0.0
580,390 - -0.4
580,395 - 2.0
580,397 + -3.3
580,398 + 0.9
580,399 + -1.2
580,403 - -0.8
580,405 - -3.2
580,408 - -2.6
580,421 + -1.9
580,449 - 0.1
580,485 - -2.6
580,597 - -1.1
580,693 + -0.5
580,791 + -2.8
580,797 + -2.6
580,797 - -1.4
580,798 + -2.7
580,799 - -0.1
580,805 + -4.7
580,806 - -0.1
580,807 + 0.6
580,807 - -0.7
580,809 - -2.0
580,813 + -0.3
580,813 + -0.5
580,817 - -1.4
580,818 + -0.6
580,822 - -0.9
580,826 + -1.1
580,828 + -0.0
580,829 + -1.4
580,837 + -0.3
580,841 + -2.1
580,845 - 2.4
580,964 - 2.2
580,964 - -0.7
580,979 + -1.3