Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3776

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552938 to 553662 12143 mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553955 to 556574 12144 mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557180 to 558034 12145

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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553,013 + 12143 mRNA_3775 0.10 -1.1
553,424 + 12143 mRNA_3775 0.67 -2.6
553,575 - 12143 mRNA_3775 0.88 -1.6
553,652 - 1.6
553,754 + -2.3
553,861 - -2.9
555,033 + 12144 mRNA_3776 0.41 -1.8
555,310 - 12144 mRNA_3776 0.52 -0.6
555,463 - 12144 mRNA_3776 0.58 -2.0
555,624 - 12144 mRNA_3776 0.64 -3.2
555,774 - 12144 mRNA_3776 0.69 1.2
556,046 - 12144 mRNA_3776 0.80 -0.7
556,367 - -1.1
556,513 + -1.5
556,517 - 0.7
556,688 - 0.5
556,810 + -1.9
556,815 - 0.7
556,818 - -3.5
556,827 + -2.3
556,832 - -0.5
556,842 - -2.3
556,880 - -0.7
556,928 - -1.8
556,973 - -0.7
556,978 - 1.1
556,980 - -1.4
556,981 - 0.6
556,983 - -4.3
557,005 - -3.0
557,007 + -1.9
557,017 + -1.7
557,027 + -1.4
557,041 + 1.4
557,322 - 12145 mRNA_3777 0.17 -0.3
557,419 - 12145 mRNA_3777 0.28 1.2
557,455 - 12145 mRNA_3777 0.32 -4.1
557,564 + 12145 mRNA_3777 0.45 -0.6