Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3766

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3764: 12132 - K11808 ADE2 phosphoribosylaminoimidazole carboxylase, at 531400 to 533650 12132 mRNA_3765: 12133 - K02902 RP-L28, MRPL28, rpmB large subunit ribosomal protein L28, at 533805 to 534326 12133 mRNA_3766: 12134 - K20372 TBC1D20, GYP8 TBC1 domain family member 20, at 534427 to 536780 12134 mRNA_3767: 12135 - KOG4535 HEAT and armadillo repeat-containing protein, at 536936 to 539895 12135

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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533,560 - 0.0
533,685 - -2.7
533,694 + -0.4
533,694 - -0.5
533,722 + 0.0
534,314 + -0.9
534,437 - -0.5
534,438 - -0.7
534,446 + -0.7
534,452 + 1.4
535,927 - 12134 mRNA_3766 0.64 -1.4
535,931 + 12134 mRNA_3766 0.64 -0.1
535,949 + 12134 mRNA_3766 0.65 -2.6
535,956 + 12134 mRNA_3766 0.65 -3.4
536,212 - 12134 mRNA_3766 0.76 -1.6
536,385 - 12134 mRNA_3766 0.83 -2.0
536,522 + 12134 mRNA_3766 0.89 -2.2
536,556 + -0.7
536,650 + -1.7
536,673 - -0.6
536,710 + -0.2
536,814 - -3.1
536,816 - -1.3
537,440 - 12135 mRNA_3767 0.17 -2.0
537,575 - 12135 mRNA_3767 0.22 -2.2
537,581 + 12135 mRNA_3767 0.22 -3.3