Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3759

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3758: 12126 - HMMPfam-Glycosyl hydrolases family 15-PF00723,SUPERFAMILY--SSF48208, at 515718 to 518534 12126 mRNA_3759: 12127 - Hypothetical Protein, at 518621 to 520492 12127 mRNA_3760: 12128 - K10746 EXO1 exonuclease 1, at 521061 to 522364 12128

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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517,679 + 12126 mRNA_3758 0.70 0.4
517,864 - 12126 mRNA_3758 0.76 -3.3
517,868 - 12126 mRNA_3758 0.76 -2.2
517,879 + 12126 mRNA_3758 0.77 -1.1
517,981 + 12126 mRNA_3758 0.80 -0.6
517,987 - 12126 mRNA_3758 0.81 -2.9
518,191 + 12126 mRNA_3758 0.88 -2.2
518,314 - -0.3
518,461 - -1.3
518,463 - -0.5
518,468 + -2.0
518,591 + -2.4
518,614 - -2.6
518,618 + 1.7
518,622 + -0.7
518,632 - 0.6
518,632 - -2.5
518,653 - -2.2
518,772 + -0.6
518,790 + 1.2
518,818 - 12127 mRNA_3759 0.11 -0.2
518,819 + 12127 mRNA_3759 0.11 2.0
518,821 - 12127 mRNA_3759 0.11 -1.2
518,826 + 12127 mRNA_3759 0.11 0.3
518,826 + 12127 mRNA_3759 0.11 0.2
519,024 - 12127 mRNA_3759 0.22 -2.0
519,084 + 12127 mRNA_3759 0.25 -0.7
519,085 + 12127 mRNA_3759 0.25 -2.5
519,192 + 12127 mRNA_3759 0.31 -2.3
519,247 + 12127 mRNA_3759 0.33 -0.3
519,644 + 12127 mRNA_3759 0.55 -2.0
519,790 + 12127 mRNA_3759 0.62 -0.6
520,093 - 12127 mRNA_3759 0.79 -4.2
520,100 - 12127 mRNA_3759 0.79 -2.1
520,233 - 12127 mRNA_3759 0.86 -2.4
520,243 + 12127 mRNA_3759 0.87 -0.8
520,433 - -2.3
520,713 - 0.6
520,965 - -1.3
521,233 + 12128 mRNA_3760 0.13 -0.8