Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3749

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3748: 12116 - K00658 DLST, sucB 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase), at 490464 to 492382 12116 mRNA_3749: 12117 - HMMPfam-Nuclear pore complex assembly-PF13934,SUPERFAMILY--SSF57850, at 492760 to 497695 12117 mRNA_3750: 12118 - K13421 UMPS uridine monophosphate synthetase, at 497780 to 498794 12118

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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492,658 + -1.0
492,796 + -1.7
492,812 + 0.1
492,912 + -1.0
493,092 - -2.1
493,403 - 12117 mRNA_3749 0.13 -0.6
493,494 - 12117 mRNA_3749 0.15 -2.6
493,536 + 12117 mRNA_3749 0.16 -0.9
494,105 - 12117 mRNA_3749 0.27 -1.6
494,139 + 12117 mRNA_3749 0.28 -2.0
494,718 + 12117 mRNA_3749 0.40 0.1
495,146 + 12117 mRNA_3749 0.48 -2.0
495,290 + 12117 mRNA_3749 0.51 -3.3
495,316 - 12117 mRNA_3749 0.52 -1.5
495,424 - 12117 mRNA_3749 0.54 -0.1
495,426 - 12117 mRNA_3749 0.54 2.1
495,540 - 12117 mRNA_3749 0.56 -1.7
495,569 + 12117 mRNA_3749 0.57 -1.6
495,599 - 12117 mRNA_3749 0.58 -2.2
495,741 + 12117 mRNA_3749 0.60 -0.8
495,742 + 12117 mRNA_3749 0.60 -1.7
496,449 + 12117 mRNA_3749 0.75 0.0
496,889 - 12117 mRNA_3749 0.84 -0.0
496,906 + 12117 mRNA_3749 0.84 -1.6
496,922 + 12117 mRNA_3749 0.84 -1.0
497,352 + -1.6