Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3734

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3733: 12101 - BLAST Hybrid signal transduction histidine kinase B [Leucoa..., at 457405 to 460471 12101 mRNA_3734: 12102 - Interpro Protein HRI1, at 460954 to 461748 12102 mRNA_3735: 12103 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 461901 to 463089 12103

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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460,006 - 12101 mRNA_3733 0.85 0.6
460,010 - 12101 mRNA_3733 0.85 2.2
460,047 - 12101 mRNA_3733 0.86 -1.6
460,141 + 12101 mRNA_3733 0.89 -2.7
460,142 - 12101 mRNA_3733 0.89 -2.3
460,150 + 12101 mRNA_3733 0.90 -0.5
460,152 - 12101 mRNA_3733 0.90 -2.3
460,158 - 12101 mRNA_3733 0.90 -0.8
460,163 - 12101 mRNA_3733 0.90 0.9
460,170 + -1.4
460,171 - -1.7
460,175 - -2.1
460,190 + -1.2
460,198 + -1.6
460,320 - -2.1
460,321 - 0.9
460,326 - -0.8
460,331 + -2.1
460,342 + -1.1
460,348 - 0.1
460,352 + 0.0
460,373 - 0.0
460,474 - 0.9
460,514 - 0.6
460,518 - 0.2
460,519 + -0.2
460,525 + -0.5
460,532 + -0.3
460,542 - -2.3
460,544 + -3.7
460,556 + -0.9
460,562 - 0.3
460,564 - -1.4
460,569 + -1.2
460,599 + -0.6
460,606 - -1.4
460,611 - -2.0
460,612 - -1.9
460,618 + -1.8
460,631 - -2.0
460,631 + 1.4
460,636 + -2.3
460,636 - -3.5
460,643 - -1.2
460,648 - -2.7
460,652 - -2.3
460,661 - 1.4
460,675 + -2.4
460,681 + -2.7
460,824 + -1.0
460,901 - -0.9
461,224 - 12102 mRNA_3734 0.34 -1.5
461,243 - 12102 mRNA_3734 0.36 -1.6
461,513 - 12102 mRNA_3734 0.70 -0.6
461,523 + 12102 mRNA_3734 0.72 -0.7
461,562 + 12102 mRNA_3734 0.76 -0.8
461,992 + -0.1
461,996 + -0.3
462,113 - 12103 mRNA_3735 0.18 -0.9
462,143 - 12103 mRNA_3735 0.20 0.4
462,282 + 12103 mRNA_3735 0.32 0.8
462,566 + 12103 mRNA_3735 0.56 -1.7