Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3720

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3719: 12087 - K04043 dnaK molecular chaperone DnaK, at 424597 to 426828 12087 mRNA_3720: 12088 - HMMPfam-Conserved hypothetical protein (DUF2461)-PF09365,TIGRFAM-TIGR02453 TIGR02453 family protein-TIGR02453, at 427096 to 428543 12088 mRNA_3721: 12089 - K14544 UTP22, NOL6 U3 small nucleolar RNA-associated protein 22, at 428760 to 433033 12089

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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426,772 + 3.0
426,924 + -0.8
426,943 - 0.5
426,946 + -2.5
427,052 + -1.3
427,076 + 0.4
427,090 + -0.7
427,208 - -1.4
427,226 + -1.8
427,231 + -1.1
427,237 - -1.4
427,240 + -1.3
427,242 + 12088 mRNA_3720 0.10 0.1
427,351 + 12088 mRNA_3720 0.18 -0.9
427,363 - 12088 mRNA_3720 0.18 0.6
427,371 - 12088 mRNA_3720 0.19 -2.2
427,372 + 12088 mRNA_3720 0.19 -2.2
427,372 + 12088 mRNA_3720 0.19 -0.6
427,506 - 12088 mRNA_3720 0.28 -1.0
427,522 - 12088 mRNA_3720 0.29 -1.1
427,532 - 12088 mRNA_3720 0.30 -1.7
427,546 + 12088 mRNA_3720 0.31 -1.2
427,671 + 12088 mRNA_3720 0.40 -0.7
427,957 + 12088 mRNA_3720 0.59 -3.2
428,117 - 12088 mRNA_3720 0.71 -1.2
428,117 + 12088 mRNA_3720 0.71 -0.5
428,378 - 12088 mRNA_3720 0.89 -0.4
428,412 - -1.9
428,418 + -1.3
428,425 + -0.2
428,553 - -0.9
428,557 - -1.3
428,571 - -2.0
428,575 + -3.4
428,586 + -3.0
428,596 + -0.7
428,707 - -1.0
428,720 - -3.0
428,727 + -1.1
428,733 + -2.0