Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3718

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3717: 12085 - K03979 obgE, cgtA GTPase, at 418976 to 421073 12085 mRNA_3718: 12086 - K00249 ACADM, acd acyl-CoA dehydrogenase, at 421354 to 423944 12086 mRNA_3719: 12087 - K04043 dnaK molecular chaperone DnaK, at 424597 to 426828 12087

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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421,136 - -2.1
421,137 + -1.9
421,279 - 1.6
421,284 + 0.7
421,289 - 0.4
421,297 - 0.8
421,312 + 1.3
421,312 + -1.8
421,452 - -0.2
421,460 - -2.3
421,481 - 0.1
421,482 - -1.1
421,487 + -0.1
421,752 + 12086 mRNA_3718 0.15 0.5
421,817 + 12086 mRNA_3718 0.18 0.4
422,221 - 12086 mRNA_3718 0.33 -2.2
422,959 - 12086 mRNA_3718 0.62 -2.0
422,965 + 12086 mRNA_3718 0.62 -2.1
422,966 - 12086 mRNA_3718 0.62 -1.0
422,976 + 12086 mRNA_3718 0.63 -0.7
423,842 - -3.6
423,856 - -0.7
424,142 + -1.8
424,291 - -2.3