Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3708

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3707: 12075 - KOG2846 Predicted membrane protein, at 403479 to 405078 12075 mRNA_3708: 12076 - Hypothetical Protein, at 405406 to 406282 12076 mRNA_3709: 12077 - SUPERFAMILY--SSF52540, at 406586 to 407790 12077

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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405,145 + -0.8
405,150 - -2.1
405,159 + -2.2
405,179 + -0.3
405,290 - 0.7
405,296 - -0.3
405,322 - -0.4
405,519 + 12076 mRNA_3708 0.13 -1.4
405,721 + 12076 mRNA_3708 0.36 -0.7
405,768 + 12076 mRNA_3708 0.41 -0.1
405,898 + 12076 mRNA_3708 0.56 -0.7
405,907 - 12076 mRNA_3708 0.57 0.3
406,186 - 12076 mRNA_3708 0.89 -1.0
406,199 + -2.2
406,214 + -1.4
406,235 - 0.1
406,257 + -1.6
406,344 + -1.5
406,345 + -0.7
406,349 + -1.6
406,355 - 0.0
406,357 - -0.3
406,359 - -2.3
406,361 - -2.1
406,364 - -4.1
406,371 + -2.1
406,383 - 0.2
406,383 - 0.9
406,386 + -0.8
406,389 + -1.8
406,393 - -2.3
406,400 - -1.3
406,401 + -1.5
406,419 + -1.7
406,433 - -3.1
406,433 + -2.9
406,452 - -2.3
406,453 + -0.9
406,458 - 1.8
406,465 - -2.0
406,471 + -2.0
406,487 - -1.6
406,490 + -0.9
406,490 - -2.7
406,494 + 0.2
406,494 + -0.4
406,494 + -2.9
406,495 + 1.6
406,498 + -2.1
406,500 + -0.5
406,503 - -1.8
406,507 - 0.8
406,508 - -1.8
406,509 + 0.0
406,509 + -0.2
406,520 + -0.3
406,520 - -0.7
406,521 - -3.6
406,647 - -1.8
406,688 + -0.9
406,796 + 12077 mRNA_3709 0.17 -1.2
406,803 + 12077 mRNA_3709 0.18 -1.6
406,921 + 12077 mRNA_3709 0.28 -1.7
406,951 + 12077 mRNA_3709 0.30 -0.1
407,087 - 12077 mRNA_3709 0.42 -1.9
407,251 + 12077 mRNA_3709 0.55 -2.7