Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3703

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390554 to 394764 12070 mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394995 to 398800 12071 mRNA_3704: 12072 - Hypothetical Protein, at 399058 to 399573 12072 mRNA_3705: 12073 - Hypothetical Protein, at 399729 to 400196 12073

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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394,726 - -1.4
394,735 + -1.2
394,735 - -2.0
394,750 - -0.1
394,874 + 0.0
394,877 - -3.0
394,879 + -1.7
394,881 + -1.7
394,886 + 1.7
394,903 - -0.8
394,906 - -1.6
394,915 - -2.1
394,919 - -1.7
394,926 + -3.0
394,942 - -0.0
394,963 - -2.1
395,040 + -2.0
395,048 + -2.9
395,061 + -3.1
395,084 + -2.6
395,087 - -1.2
395,196 - 0.6
395,201 + -2.2
395,208 - -0.2
395,353 - -3.3
395,542 + 12071 mRNA_3703 0.14 -1.1
395,660 - 12071 mRNA_3703 0.17 -0.7
395,665 - 12071 mRNA_3703 0.18 -0.2
396,364 + 12071 mRNA_3703 0.36 -1.0
396,387 - 12071 mRNA_3703 0.37 -1.1
396,505 - 12071 mRNA_3703 0.40 -2.5
396,541 - 12071 mRNA_3703 0.41 -2.3
396,606 - 12071 mRNA_3703 0.42 -2.7
396,698 + 12071 mRNA_3703 0.45 -0.9
396,947 - 12071 mRNA_3703 0.51 -3.7
397,081 - 12071 mRNA_3703 0.55 -0.0
397,113 + 12071 mRNA_3703 0.56 -3.2
397,393 + 12071 mRNA_3703 0.63 -0.5
397,517 - 12071 mRNA_3703 0.66 -2.5
397,542 + 12071 mRNA_3703 0.67 -0.5
397,803 + 12071 mRNA_3703 0.74 -0.5
397,838 + 12071 mRNA_3703 0.75 0.4
397,932 - 12071 mRNA_3703 0.77 -1.9
397,953 + 12071 mRNA_3703 0.78 -1.6
398,093 - 12071 mRNA_3703 0.81 -1.1
398,384 + 12071 mRNA_3703 0.89 -2.4
398,422 + -3.3
398,537 - -0.2
398,559 + -0.2
398,963 - -0.7
398,963 + -3.4
399,549 - -0.9
399,572 + 1.2
399,691 - -1.3
399,702 + -0.2
399,715 + -0.3