Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3687

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3686: 12054 - SUPERFAMILY--SSF54695, at 348229 to 349499 12054 mRNA_3687: 12055 - K14837 NOP12 nucleolar protein 12, at 349923 to 352122 12055 mRNA_3688: 12056 - KOG4285 Mitotic phosphoprotein, at 352283 to 353789 12056

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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349,123 + 12054 mRNA_3686 0.70 0.4
349,149 - 12054 mRNA_3686 0.72 -2.8
349,237 + 12054 mRNA_3686 0.79 -2.5
349,384 + -0.6
349,400 - -1.7
349,412 - -2.3
349,412 - -2.6
349,415 - -1.6
349,417 + -1.3
349,417 + -0.8
349,417 + -0.7
349,430 - -0.2
349,539 + -2.2
349,556 - -2.8
349,562 + -1.4
349,567 - -1.4
349,569 - -0.9
349,580 + -0.4
349,590 + -2.2
349,604 + -1.7
349,605 - 0.7
349,634 + -2.9
349,656 - -1.2
349,751 + -0.4
349,867 + -2.3
349,883 + -0.9
349,889 + -1.6
350,619 + 12055 mRNA_3687 0.32 -0.8
351,041 + 12055 mRNA_3687 0.51 -1.4
351,489 - 12055 mRNA_3687 0.71 -3.0
351,950 + -0.9
352,197 - -2.7
352,213 - -2.4
352,228 + -1.4
352,407 + -0.1
352,533 - 12056 mRNA_3688 0.17 -0.6
352,671 - 12056 mRNA_3688 0.26 2.6
352,798 + 12056 mRNA_3688 0.34 -0.6