Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3685

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3684: 12052 - K05955 FNTA protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha, at 343363 to 344847 12052 mRNA_3685: 12053 - KOG4212 RNA-binding protein hnRNP-M, at 345213 to 348082 12053 mRNA_3686: 12054 - SUPERFAMILY--SSF54695, at 348229 to 349499 12054

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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344,849 - -3.6
344,859 - -1.2
344,865 + -0.3
344,867 - 0.1
344,869 - -2.3
344,875 + -0.7
344,889 - -0.5
344,892 + -2.4
345,005 - 0.6
345,028 - -0.4
345,028 - 0.5
345,032 - 0.9
345,047 + -2.2
345,051 + 0.6
345,165 - -0.9
345,170 - -2.4
345,188 - -1.5
345,195 + -0.1
345,195 + -2.8
345,432 + -2.9
345,539 - 12053 mRNA_3685 0.11 -2.2
345,594 + 12053 mRNA_3685 0.13 -0.6
345,642 + 12053 mRNA_3685 0.15 -1.7
345,746 - 12053 mRNA_3685 0.19 -0.8
345,760 + 12053 mRNA_3685 0.19 0.0
347,911 + -0.7
347,957 - -2.0
348,079 + -1.0
348,230 + 0.0
348,371 - 12054 mRNA_3686 0.11 0.3
348,395 - 12054 mRNA_3686 0.13 -0.9
348,814 - 12054 mRNA_3686 0.46 -1.4
348,832 + 12054 mRNA_3686 0.47 -0.6