Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3663

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286767 to 288003 12030 mRNA_3663: 12031 - K01738 cysK cysteine synthase A, at 288181 to 289942 12031 mRNA_3664: 12032 - K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26, at 290844 to 292094 12032

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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287,211 + 12030 mRNA_3662 0.36 0.2
287,221 - 12030 mRNA_3662 0.37 -2.4
287,222 + 12030 mRNA_3662 0.37 -2.2
287,231 - 12030 mRNA_3662 0.38 -1.2
287,237 - 12030 mRNA_3662 0.38 -1.0
287,239 + 12030 mRNA_3662 0.38 -0.0
287,246 + 12030 mRNA_3662 0.39 -1.4
287,247 - 12030 mRNA_3662 0.39 0.1
287,248 + 12030 mRNA_3662 0.39 -3.2
287,248 - 12030 mRNA_3662 0.39 -1.2
287,254 + 12030 mRNA_3662 0.39 -1.8
287,272 + 12030 mRNA_3662 0.41 -0.8
287,308 - 12030 mRNA_3662 0.44 -3.0
287,334 + 12030 mRNA_3662 0.46 -3.1
287,346 + 12030 mRNA_3662 0.47 -1.5
287,389 + 12030 mRNA_3662 0.50 -0.8
287,403 - 12030 mRNA_3662 0.51 -1.3
287,408 + 12030 mRNA_3662 0.52 -0.8
287,410 + 12030 mRNA_3662 0.52 -0.2
287,412 - 12030 mRNA_3662 0.52 -1.9
287,419 + 12030 mRNA_3662 0.53 -0.1
287,421 + 12030 mRNA_3662 0.53 0.4
287,429 - 12030 mRNA_3662 0.54 -2.2
287,431 - 12030 mRNA_3662 0.54 -3.5
287,433 - 12030 mRNA_3662 0.54 -3.3
287,446 - 12030 mRNA_3662 0.55 -1.1
287,478 + 12030 mRNA_3662 0.57 -1.7
287,507 - 12030 mRNA_3662 0.60 -1.5
287,543 - 12030 mRNA_3662 0.63 0.5
287,546 + 12030 mRNA_3662 0.63 -1.5
287,579 - 12030 mRNA_3662 0.66 -0.2
287,684 - 12030 mRNA_3662 0.74 -1.9
287,687 + 12030 mRNA_3662 0.74 -1.3
287,706 - 12030 mRNA_3662 0.76 -2.6
287,712 - 12030 mRNA_3662 0.76 -1.7
287,723 - 12030 mRNA_3662 0.77 -1.4
287,731 - 12030 mRNA_3662 0.78 -0.0
287,732 - 12030 mRNA_3662 0.78 -1.2
287,738 - 12030 mRNA_3662 0.78 -0.2
287,760 - 12030 mRNA_3662 0.80 -2.0
287,779 - 12030 mRNA_3662 0.82 0.1
287,803 - 12030 mRNA_3662 0.84 -2.4
288,237 - 0.8
288,491 - 12031 mRNA_3663 0.18 -3.7
288,966 - 12031 mRNA_3663 0.45 1.0
288,976 + 12031 mRNA_3663 0.45 -0.3
289,238 + 12031 mRNA_3663 0.60 -3.0
289,525 - 12031 mRNA_3663 0.76 -1.2
289,682 + 12031 mRNA_3663 0.85 -2.2
289,687 - 12031 mRNA_3663 0.85 0.2
289,841 - -0.2
289,841 - -2.9
289,849 - -0.5
289,859 + -0.7
289,860 + -1.0
290,013 + -2.6
290,018 + -0.5
290,028 - -0.5
290,166 - -0.4
290,293 + -1.4
290,589 + 0.8
290,613 - -2.1
290,869 - 0.3
290,880 + -2.8
290,881 + 0.5
290,923 - -2.9