Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3660

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3659: 12027 - Hypothetical Protein, at 283501 to 284501 12027 mRNA_3660: 12028 - HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540, at 285259 to 286189 12028 mRNA_3661: 12029 - Hypothetical Protein, at 286182 to 286643 12029 mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286767 to 288003 12030

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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284,481 - -2.4
284,664 + -0.5
285,222 - -2.2
285,346 - -0.0
285,366 + 12028 mRNA_3660 0.11 -0.3
285,525 + 12028 mRNA_3660 0.29 0.1
285,534 + 12028 mRNA_3660 0.30 -1.8
285,805 + 12028 mRNA_3660 0.59 -0.5
286,475 - 12029 mRNA_3661 0.63 -1.5
286,530 + 12029 mRNA_3661 0.75 -4.0
286,532 - 12029 mRNA_3661 0.76 -0.8
286,536 + 12029 mRNA_3661 0.77 -2.2
286,541 + 12029 mRNA_3661 0.78 -1.1
286,545 - 12029 mRNA_3661 0.79 -0.9
286,560 + 12029 mRNA_3661 0.82 -2.0
286,591 - 12029 mRNA_3661 0.89 -0.7
286,706 - -2.4
286,720 + -1.4
286,721 - -0.7
286,767 + -0.7
286,858 + -1.3
286,879 - -1.7
286,890 - 0.1
286,891 + 12030 mRNA_3662 0.10 -1.5
286,922 - 12030 mRNA_3662 0.13 -3.1
286,972 - 12030 mRNA_3662 0.17 -0.1
286,982 + 12030 mRNA_3662 0.17 -1.2
287,010 + 12030 mRNA_3662 0.20 -2.9
287,063 - 12030 mRNA_3662 0.24 -3.2
287,063 + 12030 mRNA_3662 0.24 -2.8
287,070 + 12030 mRNA_3662 0.24 -1.7
287,079 - 12030 mRNA_3662 0.25 1.3
287,085 - 12030 mRNA_3662 0.26 -1.0
287,092 + 12030 mRNA_3662 0.26 0.0
287,100 + 12030 mRNA_3662 0.27 -2.0
287,107 - 12030 mRNA_3662 0.27 -0.7
287,108 + 12030 mRNA_3662 0.28 -0.5