Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3651

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3650: 12018 - Hypothetical Protein, at 256801 to 258115 12018 mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258338 to 258829 12019 mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259462 to 260271 12020

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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257,412 + 12018 mRNA_3650 0.46 -0.6
257,579 - 12018 mRNA_3650 0.59 -2.9
257,604 - 12018 mRNA_3650 0.61 0.6
257,718 - 12018 mRNA_3650 0.70 -1.4
257,736 + 12018 mRNA_3650 0.71 -0.2
257,757 + 12018 mRNA_3650 0.73 0.4
258,299 + -2.0
258,312 + -2.9
258,459 + 12019 mRNA_3651 0.25 -1.3
258,563 + 12019 mRNA_3651 0.46 -2.5
258,579 - 12019 mRNA_3651 0.49 0.2
258,584 - 12019 mRNA_3651 0.50 -1.0
258,588 + 12019 mRNA_3651 0.51 -2.7
258,589 + 12019 mRNA_3651 0.51 0.4
258,590 + 12019 mRNA_3651 0.51 -2.5
258,876 + -3.9
258,882 - 1.7
258,982 - -1.3
259,004 - -1.6
259,010 - -0.7
259,011 + -2.2
259,110 - -0.0
259,149 - -0.3
259,306 + -0.6
259,431 - -1.6
259,459 + -1.2
259,576 - 12020 mRNA_3652 0.14 -0.8
259,600 + 12020 mRNA_3652 0.17 -2.5
259,727 + 12020 mRNA_3652 0.33 -2.1
259,736 - 12020 mRNA_3652 0.34 -1.1
259,766 + 12020 mRNA_3652 0.38 -1.0