Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3650

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3649: 12017 - HMMPfam-Protein of unknown function, DUF604-PF04646, at 253942 to 255854 12017 mRNA_3650: 12018 - Hypothetical Protein, at 256801 to 258115 12018 mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258338 to 258829 12019

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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255,837 - -2.7
255,875 + -3.3
255,995 - -3.9
256,006 - -0.3
256,015 - -1.9
256,020 + -0.2
256,046 + -0.4
256,084 - -1.2
256,131 - 0.3
256,139 + -1.6
256,156 + -2.5
256,262 + -1.4
256,279 - -1.5
256,280 - -1.3
256,282 + 0.3
256,286 + -3.0
256,286 - -0.2
256,287 - -1.1
256,288 + -2.8
256,288 + -0.2
256,297 + -1.5
256,298 + -0.3
256,300 - 0.4
256,301 + -0.3
256,310 - -0.3
256,314 - 0.0
256,327 + -0.5
256,333 - -4.3
256,377 - -1.3
256,379 + -1.2
256,379 + -0.3
256,384 - 0.4
256,393 - -1.5
256,400 + -4.0
256,404 - -1.2
256,435 - -1.7
256,436 - 0.0
256,447 - -0.2
256,450 + -0.9
256,453 + -1.7
256,461 + -0.9
256,463 - 0.2
256,468 + -3.7
256,470 - -1.4
256,475 - -2.1
256,481 - -3.3
256,484 + -1.9
256,486 - -3.8
256,486 - -0.1
256,491 - -1.0
256,492 + -0.0
256,509 - -3.0
256,512 + -3.2
256,522 - -1.0
256,525 + -1.7
256,530 + -1.8
256,542 - 0.4
256,543 - -1.7
256,548 - -0.8
256,555 - -2.2
256,570 - -3.0
256,572 + -2.7
256,574 - -0.6
256,596 + -0.9
256,600 - 0.7
256,606 - -2.1
256,612 - 0.9
256,613 - -2.3
256,614 + 0.0
256,615 - -0.5
256,618 - -1.1
256,620 - -1.6
256,622 + -0.7
256,624 - -1.4
256,627 + -0.4
256,637 + 0.1
256,640 - -1.7
256,644 - -2.1
256,645 - -0.2
256,646 + -1.4
256,655 + -0.7
256,655 - 0.2
256,661 - 2.7
256,661 - -3.8
256,665 - -1.0
256,676 + -0.1
256,681 + -0.4
256,706 + -0.3
256,785 - -3.6
256,825 + -1.4
256,835 - -2.3
256,960 - 12018 mRNA_3650 0.12 -2.6
256,964 - 12018 mRNA_3650 0.12 -2.9
256,966 + 12018 mRNA_3650 0.13 -1.5
256,981 + 12018 mRNA_3650 0.14 -1.2
256,993 + 12018 mRNA_3650 0.15 2.1
256,998 + 12018 mRNA_3650 0.15 -1.3
257,090 - 12018 mRNA_3650 0.22 -0.9
257,108 + 12018 mRNA_3650 0.23 -0.8
257,109 - 12018 mRNA_3650 0.23 -0.8
257,118 - 12018 mRNA_3650 0.24 0.1
257,119 - 12018 mRNA_3650 0.24 -0.2
257,119 - 12018 mRNA_3650 0.24 -1.4
257,126 - 12018 mRNA_3650 0.25 -0.9
257,130 + 12018 mRNA_3650 0.25 -0.5
257,137 + 12018 mRNA_3650 0.26 1.5
257,152 + 12018 mRNA_3650 0.27 -0.6
257,309 - 12018 mRNA_3650 0.39 -2.7
257,313 + 12018 mRNA_3650 0.39 -0.8
257,317 + 12018 mRNA_3650 0.39 -1.3
257,412 + 12018 mRNA_3650 0.46 -0.6
257,579 - 12018 mRNA_3650 0.59 -2.9
257,604 - 12018 mRNA_3650 0.61 0.6
257,718 - 12018 mRNA_3650 0.70 -1.4
257,736 + 12018 mRNA_3650 0.71 -0.2
257,757 + 12018 mRNA_3650 0.73 0.4
258,299 + -2.0
258,312 + -2.9
258,459 + 12019 mRNA_3651 0.25 -1.3
258,563 + 12019 mRNA_3651 0.46 -2.5
258,579 - 12019 mRNA_3651 0.49 0.2
258,584 - 12019 mRNA_3651 0.50 -1.0
258,588 + 12019 mRNA_3651 0.51 -2.7
258,589 + 12019 mRNA_3651 0.51 0.4
258,590 + 12019 mRNA_3651 0.51 -2.5
258,876 + -3.9
258,882 - 1.7
258,982 - -1.3
259,004 - -1.6
259,010 - -0.7
259,011 + -2.2
259,110 - -0.0