Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3649

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3648: 12016 - K15448 TRM112, TRMT112 multifunctional methyltransferase subunit TRM112, at 252546 to 253342 12016 mRNA_3649: 12017 - HMMPfam-Protein of unknown function, DUF604-PF04646, at 253942 to 255854 12017 mRNA_3650: 12018 - Hypothetical Protein, at 256801 to 258115 12018

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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253,376 + -2.8
253,490 - -2.1
253,537 + -2.8
253,631 + -2.1
253,650 + -2.6
253,653 - -1.1
253,660 - 0.7
253,664 + -0.2
253,687 - 1.3
253,692 + -0.7
253,796 + 0.9
253,810 - -1.7
253,810 + -1.8
253,835 - -1.9
253,968 - -1.4
254,553 - 12017 mRNA_3649 0.32 -0.5
255,440 + 12017 mRNA_3649 0.78 0.7
255,552 - 12017 mRNA_3649 0.84 1.3
255,556 - 12017 mRNA_3649 0.84 -0.7
255,556 - 12017 mRNA_3649 0.84 -1.2
255,698 - -0.7
255,718 + 0.8
255,837 - -2.7
255,875 + -3.3
255,995 - -3.9
256,006 - -0.3
256,015 - -1.9
256,020 + -0.2
256,046 + -0.4
256,084 - -1.2
256,131 - 0.3
256,139 + -1.6
256,156 + -2.5
256,262 + -1.4
256,279 - -1.5
256,280 - -1.3
256,282 + 0.3
256,286 + -3.0
256,286 - -0.2
256,287 - -1.1
256,288 + -2.8
256,288 + -0.2
256,297 + -1.5
256,298 + -0.3
256,300 - 0.4
256,301 + -0.3
256,310 - -0.3
256,314 - 0.0
256,327 + -0.5
256,333 - -4.3
256,377 - -1.3
256,379 + -1.2
256,379 + -0.3
256,384 - 0.4
256,393 - -1.5
256,400 + -4.0
256,404 - -1.2
256,435 - -1.7
256,436 - 0.0
256,447 - -0.2
256,450 + -0.9
256,453 + -1.7
256,461 + -0.9
256,463 - 0.2
256,468 + -3.7
256,470 - -1.4
256,475 - -2.1
256,481 - -3.3
256,484 + -1.9
256,486 - -3.8
256,486 - -0.1
256,491 - -1.0
256,492 + -0.0
256,509 - -3.0
256,512 + -3.2
256,522 - -1.0
256,525 + -1.7
256,530 + -1.8
256,542 - 0.4
256,543 - -1.7
256,548 - -0.8
256,555 - -2.2
256,570 - -3.0
256,572 + -2.7
256,574 - -0.6
256,596 + -0.9
256,600 - 0.7
256,606 - -2.1
256,612 - 0.9
256,613 - -2.3
256,614 + 0.0
256,615 - -0.5
256,618 - -1.1
256,620 - -1.6
256,622 + -0.7
256,624 - -1.4
256,627 + -0.4
256,637 + 0.1
256,640 - -1.7
256,644 - -2.1
256,645 - -0.2
256,646 + -1.4
256,655 + -0.7
256,655 - 0.2
256,661 - 2.7
256,661 - -3.8
256,665 - -1.0
256,676 + -0.1
256,681 + -0.4
256,706 + -0.3
256,785 - -3.6
256,825 + -1.4
256,835 - -2.3